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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FBXO30-2F-box protein 30. (739 aa)    
Predicted Functional Partners:
S4RT68_PETMA
Farnesyl-diphosphate farnesyltransferase 1.
  
 0.909
S4RM75_PETMA
Geranylgeranyl diphosphate synthase 1; Belongs to the FPP/GGPP synthase family.
    
 0.886
S4R749_PETMA
Alkyl transferase; Belongs to the UPP synthase family.
  
 
 0.848
CHURC1-FNTB
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
   
 0.842
LSS
Lanosterol synthase.
  
 
 0.832
S4S043_PETMA
Prenyl (decaprenyl) diphosphate synthase, subunit 1; Belongs to the FPP/GGPP synthase family.
    
 0.831
S4RI02_PETMA
Farnesyltransferase, CAAX box, alpha.
     
 0.818
S4R9N7_PETMA
Prenyl (decaprenyl) diphosphate synthase, subunit 2; Belongs to the FPP/GGPP synthase family.
    
 0.815
ENSPMAP00000001833
annotation not available
  
 
 0.793
S4RX59_PETMA
tRNA isopentenyltransferase 1; Belongs to the IPP transferase family.
    
 0.781
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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