Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TLCD3ATLC domain containing 3B. (126 aa)    
Predicted Functional Partners:
S4R719_PETMA
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.747
S4RF75_PETMA
Potassium channel tetramerization domain containing 10.
      
 0.644
S4R4Y6_PETMA
Actin related protein 6; Belongs to the actin family.
      
 0.641
S4R7K2_PETMA
Guided entry of tail-anchored proteins factor 4.
      
 0.641
GGT7
Gamma-glutamyltransferase 7.
      
 0.615
S4REZ1_PETMA
Protein yippee-like; Belongs to the yippee family.
      
 0.615
S4R7W6_PETMA
SKI family transcriptional corepressor 1b.
      
 0.613
S4RUG3_PETMA
C2 NT-type domain-containing protein.
      
 0.612
S4RG31_PETMA
CLN8 transmembrane ER and ERGIC protein.
      
 0.610
S4RMQ8_PETMA
CLN8 transmembrane ER and ERGIC protein.
      
 0.610
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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