Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R7I0_PETMANuclear respiratory factor 1. (297 aa)    
Predicted Functional Partners:
S4RPM2_PETMA
Transcription factor A, mitochondrial.
    
 0.795
S4RUG9_PETMA
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
    
 0.708
S4RS76_PETMA
RNA binding motif protein 22.
    
 0.693
S4RSM5_PETMA
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
    
 0.678
S4RI54_PETMA
Uncharacterized protein.
    
   0.650
S4RXU5_PETMA
Citrate synthase; Belongs to the citrate synthase family.
      
 0.529
BRF1
BRF1 RNA polymerase III transcription initiation factor subunit.
      
 0.527
S4RI79_PETMA
Nuclear factor, erythroid 2-like 2a.
    
 
 0.525
S4RCN8_PETMA
Nuclear factor, erythroid 2-like 1a.
    
 
 0.512
S4RX15_PETMA
Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
     
 0.489
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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