STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R7I9_PETMAUncharacterized protein. (387 aa)    
Predicted Functional Partners:
S4RAK1_PETMA
VPS35 endosomal protein sorting factor like.
 
     0.942
S4R6Q1_PETMA
Copper metabolism (Murr1) domain containing 1.
    
 
 0.748
S4RCJ6_PETMA
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.745
S4R588_PETMA
KOG2701 domain-containing protein.
    
 
 0.715
S4RTJ2_PETMA
VPS26 endosomal protein sorting factor C.
   
 
 0.647
S4RM50_PETMA
DENN domain containing 10.
    
 
 0.570
COMMD10
COMM domain containing 10.
    
 
 0.558
S4RTQ7_PETMA
COMM domain containing 8.
    
 
 0.469
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.