STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R7L0_PETMAC3H1-type domain-containing protein. (104 aa)    
Predicted Functional Partners:
S4RNW6_PETMA
Cleavage and polyadenylation specificity factor subunit 2.
   
 
  0.812
S4RNL4_PETMA
WWE domain-containing protein.
     
 0.811
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.702
UBB
Ubiquitin B.
   
  0.693
S4RDK2_PETMA
Ferrochelatase; Belongs to the ferrochelatase family.
   
    0.689
S4RQA2_PETMA
Ion_trans domain-containing protein.
     
 0.655
S4RFB3_PETMA
Sorcin.
   
    0.645
WDR77
WD repeat domain 77.
   
 
  0.613
S4RHP1_PETMA
Ubiquitin-like modifier activating enzyme 5.
    
  0.540
S4RN38_PETMA
Ubiquitin-like modifier activating enzyme 3.
    
  0.540
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.