STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NOP9NOP9 nucleolar protein. (439 aa)    
Predicted Functional Partners:
S4RT04_PETMA
Helicase C-terminal domain-containing protein.
   
 
 0.977
S4R776_PETMA
Bystin-like.
   
 
 0.969
S4RU29_PETMA
NOP58 ribonucleoprotein homolog (yeast).
   
   0.960
S4R581_PETMA
TRAUB domain-containing protein.
   
 
 0.948
S4RR36_PETMA
Spb1_C domain-containing protein.
   
    0.939
S4RLB7_PETMA
Ribosomal L1 domain containing 1.
   
  
 0.916
S4R6V7_PETMA
WD repeat domain 74.
   
   0.915
DDX54
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.
   
 
 0.906
S4RC43_PETMA
UTP4 small subunit processome component.
   
 
 0.903
S4RH56_PETMA
Uncharacterized protein.
   
 
 0.900
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.