Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NOP9NOP9 nucleolar protein. (439 aa)    
Predicted Functional Partners:
S4R776_PETMA
Bystin-like.
   
 0.990
S4RC43_PETMA
UTP4 small subunit processome component.
   
 0.988
S4RU29_PETMA
NOP58 ribonucleoprotein homolog (yeast).
   
   0.981
S4RN64_PETMA
U3snoRNP10 domain-containing protein.
   
 0.970
S4RPM6_PETMA
BP28CT domain-containing protein.
   
 
 0.938
S4RED4_PETMA
NOP56 ribonucleoprotein homolog.
   
 
 0.930
S4RJG5_PETMA
Transducin (beta)-like 3.
   
 0.927
S4RDW7_PETMA
Uncharacterized protein.
   
 
 0.923
S4RZ74_PETMA
UTP6 small subunit processome component.
   
  0.920
BOP1
Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
  0.919
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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