Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R7L3_PETMAUncharacterized protein. (343 aa)    
Predicted Functional Partners:
S4RIN8_PETMA
Uncharacterized protein.
 
      0.900
S4RYH1_PETMA
RAB11B, member RAS oncogene family, a.
    
  0.833
S4RYW3_PETMA
6-pyruvoyltetrahydropterin synthase.
   
  0.690
S4R6I4_PETMA
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.676
S4RRJ3_PETMA
Uncharacterized protein.
   
 0.656
S4RTF2_PETMA
Glutamine synthetase.
    
 0.628
S4R797_PETMA
Uncharacterized protein.
   
 
 0.596
S4RMR4_PETMA
Glutamyl-tRNA(Gln) amidotransferase, subunit B.
     
  0.592
S4RR98_PETMA
Ring-box 1, E3 ubiquitin protein ligase.
      
 0.589
S4RIG5_PETMA
HRas proto-oncogene, GTPase b.
    
  0.588
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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