Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
S4R7L8_PETMACalponin-homology (CH) domain-containing protein. (160 aa)    
Predicted Functional Partners:
S4RCH3_PETMA
NudE neurodevelopment protein 1.
    
 
 0.949
S4R6L7_PETMA
Cyclin-dependent kinase 12.
    
 
 0.777
S4RJK2_PETMA
Polymerase (DNA-directed), delta interacting protein 3.
   
 
 0.715
S4RXS2_PETMA
USP domain-containing protein; Belongs to the peptidase C19 family.
   
  
 0.627
S4RI52_PETMA
Serine and arginine rich splicing factor 11.
      
 0.613
S4RW07_PETMA
Uncharacterized protein.
      
 0.609
S4RAI7_PETMA
Uncharacterized protein.
    
  0.602
S4RPC7_PETMA
Uncharacterized protein.
    
  0.602
S4RQS7_PETMA
PHD-type domain-containing protein.
    
  0.602
CCNK
Cyclin K; Belongs to the cyclin family.
   
 
 0.503
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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