Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R7M0_PETMAUncharacterized protein. (159 aa)    
Predicted Functional Partners:
S4R848_PETMA
Uncharacterized protein.
      
 0.609
S4RFP0_PETMA
SET domain-containing protein.
      
 0.593
S4RJH4_PETMA
Uncharacterized protein.
      
 0.554
S4RT45_PETMA
Uncharacterized protein.
      
 0.461
S4R6V7_PETMA
WD repeat domain 74.
      
 0.459
S4RHZ1_PETMA
LIM and SH3 protein 1.
      
 0.458
S4RQU9_PETMA
ADP-ribosylation factor-like 8; Belongs to the small GTPase superfamily. Arf family.
      
 0.458
S4RU20_PETMA
Organic cation transporter 2.
      
 0.458
S4S0V8_PETMA
G protein-coupled receptor 186; Belongs to the G-protein coupled receptor 1 family.
      
 0.458
S4R9J0_PETMA
Cell growth regulator with ring finger domain 1.
      
 0.453
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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