Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R7P4_PETMAFamily with sequence similarity 8 member A1b. (178 aa)    
Predicted Functional Partners:
S4R656_PETMA
PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1.
      
 0.865
AMFR
Uncharacterized protein.
    
 
 0.852
S4RN76_PETMA
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.852
S4RML2_PETMA
CUE domain-containing protein.
    
 
 0.830
S4R4A5_PETMA
Family with sequence similarity 136 member A.
      
 0.775
S4RCX9_PETMA
Endoplasmic reticulum lectin 1.
    
 
 0.752
S4RM21_PETMA
PRKCSH domain-containing protein.
    
 
 0.752
S4RHC4_PETMA
HERPUD family member 2.
    
 
 0.678
S4R9J0_PETMA
Cell growth regulator with ring finger domain 1.
      
 0.668
S4R6B7_PETMA
FRA10A associated CGG repeat 1.
      
 0.653
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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