Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R7P8_PETMARUN domain-containing protein. (508 aa)    
Predicted Functional Partners:
S4RIC5_PETMA
VPS51 subunit of GARP complex.
   
  
 0.696
S4RLE6_PETMA
Rab-GAP TBC domain-containing protein.
    
 
 0.687
S4RIB2_PETMA
Si:ch211-225b10.4.
      
 0.659
S4RVR4_PETMA
TATA element modulatory factor 1.
      
 0.616
S4R875_PETMA
Islet cell autoantigen 1-like.
    
 
 0.584
S4RRF0_PETMA
Islet cell autoantigen 1.
    
 
 0.584
S4RMU5_PETMA
CWC22 spliceosome associated protein homolog.
      
 0.554
S4RFB6_PETMA
Zinc finger, MYND-type containing 10.
      
 0.542
S4RLY6_PETMA
VPS54 subunit of GARP complex.
      
 0.510
S4REX6_PETMA
EARP complex and GARP complex interacting protein 1.
      
 0.459
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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