Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R7Q1_PETMAUncharacterized protein. (279 aa)    
Predicted Functional Partners:
S4RIP9_PETMA
Heat shock protein 5; Belongs to the heat shock protein 70 family.
    
 
 0.605
NEU1
Neuraminidase 1.
   
 0.536
NEU1-2
Neuraminidase 1.
   
 0.536
S4RKW0_PETMA
VPS26, retromer complex component A.
    
 
 0.414
S4R4Q1_PETMA
Biorientation of chromosomes in cell division 1.
    
 0.408
S4RCJ7_PETMA
BetaGal_dom4_5 domain-containing protein.
    
 0.408
S4RJX4_PETMA
Beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) b; Belongs to the glycosyl hydrolase 35 family.
    
 0.408
S4RPN5_PETMA
Beta-galactosidase.
    
 0.408
S4RSM9_PETMA
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 
 0.405
S4RCX9_PETMA
Endoplasmic reticulum lectin 1.
   
 
 0.402
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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