Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R7Q6_PETMACytokine receptor-like factor 3. (439 aa)    
Predicted Functional Partners:
S4RZ74_PETMA
UTP6 small subunit processome component.
      
 0.851
PHF5A
PHD finger protein 5A.
      
 0.837
S4RQ09_PETMA
Uncharacterized protein.
      
 0.780
S4R6R2_PETMA
Vacuolar protein sorting 25 homolog.
    
   0.683
S4R6J5_PETMA
Transcription elongation factor, mitochondrial.
      
 0.662
S4RVY6_PETMA
Apoptosis inhibitor 5.
      
 0.660
S4RQW7_PETMA
BRCT domain-containing protein.
      
 0.653
MED17
Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
      
 0.625
S4RH26_PETMA
Interleukin enhancer binding factor 3a.
      
 0.612
S4RNW9_PETMA
Leucine-rich repeats and calponin homology (CH) domain containing 3.
      
 0.597
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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