S4R7R0_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R7R0_PETMA

Heat shock protein 90, beta (grp94), member 1. (782 aa)

Predicted Functional Partners:

S4RIP9_PETMA

0.999

S4R4N4_PETMA

0.993

S4RCT9_PETMA

0.993

S4RTZ2_PETMA

0.993

S4RDV2_PETMA

0.992

S4REL5_PETMA

0.992

S4RCV0_PETMA

0.986

S4RA11_PETMA

0.984

S4RXW1_PETMA

0.981

S4RZW1_PETMA

0.976

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R4N4_PETMA	S4R7R0_PETMA	ENSPMAP00000000163	ENSPMAP00000001240	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 90, beta (grp94), member 1.	0.993
S4R4N4_PETMA	S4RCT9_PETMA	ENSPMAP00000000163	ENSPMAP00000003021	Heat shock protein 90 alpha family class A member 1.	Calreticulin.	0.682
S4R4N4_PETMA	S4RDV2_PETMA	ENSPMAP00000000163	ENSPMAP00000003384	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 90 alpha family class A member 1.	0.900
S4R4N4_PETMA	S4REL5_PETMA	ENSPMAP00000000163	ENSPMAP00000003647	Heat shock protein 90 alpha family class A member 1.	Uncharacterized protein.	0.972
S4R4N4_PETMA	S4RIP9_PETMA	ENSPMAP00000000163	ENSPMAP00000005081	Heat shock protein 90 alpha family class A member 1.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.927
S4R4N4_PETMA	S4RTZ2_PETMA	ENSPMAP00000000163	ENSPMAP00000008682	Heat shock protein 90 alpha family class A member 1.	Calreticulin.	0.682
S4R4N4_PETMA	S4RZW1_PETMA	ENSPMAP00000000163	ENSPMAP00000010752	Heat shock protein 90 alpha family class A member 1.	Si:ch211-274f20.2.	0.631
S4R7R0_PETMA	S4R4N4_PETMA	ENSPMAP00000001240	ENSPMAP00000000163	Heat shock protein 90, beta (grp94), member 1.	Heat shock protein 90 alpha family class A member 1.	0.993
S4R7R0_PETMA	S4RA11_PETMA	ENSPMAP00000001240	ENSPMAP00000002042	Heat shock protein 90, beta (grp94), member 1.	Thioredoxin domain-containing protein.	0.984
S4R7R0_PETMA	S4RCT9_PETMA	ENSPMAP00000001240	ENSPMAP00000003021	Heat shock protein 90, beta (grp94), member 1.	Calreticulin.	0.993
S4R7R0_PETMA	S4RCV0_PETMA	ENSPMAP00000001240	ENSPMAP00000003032	Heat shock protein 90, beta (grp94), member 1.	Protein disulfide isomerase family A, member 6; Belongs to the protein disulfide isomerase family.	0.986
S4R7R0_PETMA	S4RDV2_PETMA	ENSPMAP00000001240	ENSPMAP00000003384	Heat shock protein 90, beta (grp94), member 1.	Heat shock protein 90 alpha family class A member 1.	0.992
S4R7R0_PETMA	S4REL5_PETMA	ENSPMAP00000001240	ENSPMAP00000003647	Heat shock protein 90, beta (grp94), member 1.	Uncharacterized protein.	0.992
S4R7R0_PETMA	S4RIP9_PETMA	ENSPMAP00000001240	ENSPMAP00000005081	Heat shock protein 90, beta (grp94), member 1.	Heat shock protein 5; Belongs to the heat shock protein 70 family.	0.999
S4R7R0_PETMA	S4RTZ2_PETMA	ENSPMAP00000001240	ENSPMAP00000008682	Heat shock protein 90, beta (grp94), member 1.	Calreticulin.	0.993
S4R7R0_PETMA	S4RXW1_PETMA	ENSPMAP00000001240	ENSPMAP00000010052	Heat shock protein 90, beta (grp94), member 1.	Canopy FGF signaling regulator 2.	0.981
S4R7R0_PETMA	S4RZW1_PETMA	ENSPMAP00000001240	ENSPMAP00000010752	Heat shock protein 90, beta (grp94), member 1.	Si:ch211-274f20.2.	0.976
S4RA11_PETMA	S4R7R0_PETMA	ENSPMAP00000002042	ENSPMAP00000001240	Thioredoxin domain-containing protein.	Heat shock protein 90, beta (grp94), member 1.	0.984
S4RA11_PETMA	S4RCT9_PETMA	ENSPMAP00000002042	ENSPMAP00000003021	Thioredoxin domain-containing protein.	Calreticulin.	0.956
S4RA11_PETMA	S4RCV0_PETMA	ENSPMAP00000002042	ENSPMAP00000003032	Thioredoxin domain-containing protein.	Protein disulfide isomerase family A, member 6; Belongs to the protein disulfide isomerase family.	0.896