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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R7R3_PETMAPotassium voltage-gated channel, shaker-related subfamily, beta member 1 a. (200 aa)    
Predicted Functional Partners:
S4RG25_PETMA
Nucleoporin 133.
   
 0.889
S4RPT7_PETMA
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.877
S4RGH0_PETMA
Inositol monophosphatase 1.
   
 
 0.854
S4RZW7_PETMA
Potassium voltage-gated channel, subfamily F, member 1b; Belongs to the potassium channel family.
    
 0.822
S4RYF7_PETMA
2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily.
  
 
  0.821
S4R5N3_PETMA
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
 0.817
S4RBG4_PETMA
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.813
S4RPP3_PETMA
Pyridoxal (pyridoxine, vitamin B6) kinase a.
    
 0.813
S4RSA5_PETMA
Uncharacterized protein.
  
 
 0.808
S4RX62_PETMA
Aminotran_5 domain-containing protein.
  
 
  0.803
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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