Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R7R4_PETMAUncharacterized protein. (80 aa)    
Predicted Functional Partners:
S4RM48_PETMA
Uncharacterized protein.
   
 
  0.966
S4RH06_PETMA
Cyclin D binding myb-like transcription factor 1.
     
  0.940
S4R765_PETMA
Ribosomal protein L26.
   
   0.891
RPL3L
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
   0.837
S4RK53_PETMA
LLP homolog, long-term synaptic facilitation factor.
   
    0.815
S4RI23_PETMA
Mitochondrial ribosomal protein L24.
   
   0.714
S4RIB7_PETMA
General transcription factor IIH, polypeptide 3.
      
 0.667
S4RWT1_PETMA
Mitochondrial ribosomal protein L10.
      
 0.645
S4RXT5_PETMA
Polynucleotide kinase 3'-phosphatase.
      
 0.630
S4RBD0_PETMA
Renalase, FAD-dependent amine oxidase.
      
 0.599
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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