Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R7S2_PETMAUncharacterized protein. (544 aa)    
Predicted Functional Partners:
S4R8K9_PETMA
HDAC_interact domain-containing protein.
    
 
 0.837
S4R8Q6_PETMA
PNT domain-containing protein.
      
 0.660
S4RA08_PETMA
Uncharacterized protein.
      
 0.593
S4RRU1_PETMA
Uncharacterized protein.
      
 0.593
S4RSW9_PETMA
Neuronal differentiation 1.
   
 
 0.533
S4RJF9_PETMA
Uncharacterized protein.
   
  
 0.482
PACRGL
Parkin coregulated like.
      
 0.461
S4RM69_PETMA
NR LBD domain-containing protein.
      
 0.458
S4RNR3_PETMA
Zinc finger protein 131.
      
 0.458
ESR2-2
Estrogen receptor 2.
      
 0.458
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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