Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4R7S7_PETMAWD_REPEATS_REGION domain-containing protein. (317 aa)    
Predicted Functional Partners:
S4R4K3_PETMA
Uncharacterized protein.
   
 0.999
S4RRJ1_PETMA
WD repeat domain 36.
   
 0.999
S4RZ74_PETMA
UTP6 small subunit processome component.
   
 0.999
S4RJG5_PETMA
Transducin (beta)-like 3.
   
 0.998
S4RC43_PETMA
UTP4 small subunit processome component.
   
 0.996
S4R709_PETMA
WD_REPEATS_REGION domain-containing protein.
   
 0.994
S4RND1_PETMA
WD repeat domain 43.
   
 0.994
S4RUH1_PETMA
WD_REPEATS_REGION domain-containing protein.
   
 0.994
S4RN03_PETMA
WD repeat domain 75.
   
 0.990
S4R828_PETMA
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
   
 0.989
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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