S4R7T6_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R7T6_PETMA

Uncharacterized protein. (1644 aa)

Predicted Functional Partners:

S4RI27_PETMA

0.932

S4RC49_PETMA

0.900

S4RY80_PETMA

0.900

S4RC56_PETMA

0.899

S4R653_PETMA

0.857

S4RTD0_PETMA

0.846

S4R5D0_PETMA

0.845

S4RZE5_PETMA

0.845

S4RAM2_PETMA

0.811

S4RDF2_PETMA

0.807

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R5D0_PETMA	S4R7T6_PETMA	ENSPMAP00000000410	ENSPMAP00000001266	Uncharacterized protein.	Uncharacterized protein.	0.845
S4R5D0_PETMA	S4RAM2_PETMA	ENSPMAP00000000410	ENSPMAP00000002253	Uncharacterized protein.	Sarcoglycan, gamma.	0.979
S4R5D0_PETMA	S4RC49_PETMA	ENSPMAP00000000410	ENSPMAP00000002781	Uncharacterized protein.	Uncharacterized protein.	0.768
S4R5D0_PETMA	S4RC56_PETMA	ENSPMAP00000000410	ENSPMAP00000002788	Uncharacterized protein.	ZZ-type domain-containing protein.	0.768
S4R5D0_PETMA	S4RDF2_PETMA	ENSPMAP00000000410	ENSPMAP00000003234	Uncharacterized protein.	Uncharacterized protein.	0.878
S4R5D0_PETMA	S4RI27_PETMA	ENSPMAP00000000410	ENSPMAP00000004859	Uncharacterized protein.	ZZ-type domain-containing protein.	0.845
S4R5D0_PETMA	S4RTD0_PETMA	ENSPMAP00000000410	ENSPMAP00000008470	Uncharacterized protein.	Dystrobrevin.	0.880
S4R5D0_PETMA	S4RY80_PETMA	ENSPMAP00000000410	ENSPMAP00000010171	Uncharacterized protein.	Uncharacterized protein.	0.641
S4R5D0_PETMA	S4RZE5_PETMA	ENSPMAP00000000410	ENSPMAP00000010586	Uncharacterized protein.	Dystroglycan 1.	0.909
S4R653_PETMA	S4R7T6_PETMA	ENSPMAP00000000683	ENSPMAP00000001266	Actinin, alpha 4.	Uncharacterized protein.	0.857
S4R653_PETMA	S4RC49_PETMA	ENSPMAP00000000683	ENSPMAP00000002781	Actinin, alpha 4.	Uncharacterized protein.	0.832
S4R653_PETMA	S4RC56_PETMA	ENSPMAP00000000683	ENSPMAP00000002788	Actinin, alpha 4.	ZZ-type domain-containing protein.	0.751
S4R653_PETMA	S4RI27_PETMA	ENSPMAP00000000683	ENSPMAP00000004859	Actinin, alpha 4.	ZZ-type domain-containing protein.	0.717
S4R7T6_PETMA	S4R5D0_PETMA	ENSPMAP00000001266	ENSPMAP00000000410	Uncharacterized protein.	Uncharacterized protein.	0.845
S4R7T6_PETMA	S4R653_PETMA	ENSPMAP00000001266	ENSPMAP00000000683	Uncharacterized protein.	Actinin, alpha 4.	0.857
S4R7T6_PETMA	S4RAM2_PETMA	ENSPMAP00000001266	ENSPMAP00000002253	Uncharacterized protein.	Sarcoglycan, gamma.	0.811
S4R7T6_PETMA	S4RC49_PETMA	ENSPMAP00000001266	ENSPMAP00000002781	Uncharacterized protein.	Uncharacterized protein.	0.900
S4R7T6_PETMA	S4RC56_PETMA	ENSPMAP00000001266	ENSPMAP00000002788	Uncharacterized protein.	ZZ-type domain-containing protein.	0.899
S4R7T6_PETMA	S4RDF2_PETMA	ENSPMAP00000001266	ENSPMAP00000003234	Uncharacterized protein.	Uncharacterized protein.	0.807
S4R7T6_PETMA	S4RI27_PETMA	ENSPMAP00000001266	ENSPMAP00000004859	Uncharacterized protein.	ZZ-type domain-containing protein.	0.932