Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R7U0_PETMAUncharacterized protein. (1208 aa)    
Predicted Functional Partners:
S4RUQ5_PETMA
Uncharacterized protein.
 
     0.947
S4RSQ5_PETMA
Uncharacterized protein.
   
 0.931
S4RRF8_PETMA
Uncharacterized protein.
    
 
 0.897
S4RZU8_PETMA
Ubiquitin protein ligase E3A.
   
 0.895
MAPK6
Mitogen-activated protein kinase 6.
    
 
 0.843
S4RNF4_PETMA
Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family.
    
   0.819
S4RHF3_PETMA
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.773
RANBP2
RAN binding protein 2.
   
 0.773
UBE2N
Ubiquitin conjugating enzyme E2 N.
    
  0.714
S4RK47_PETMA
F-box and leucine-rich repeat protein 5.
    
 
 0.707
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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