STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R7U0_PETMAUncharacterized protein. (1208 aa)    
Predicted Functional Partners:
S4RUQ5_PETMA
Uncharacterized protein.
 
     0.947
S4RSQ5_PETMA
Uncharacterized protein.
   
 0.812
S4RHF3_PETMA
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.720
RANBP2
RAN binding protein 2.
   
 0.720
UBB
Ubiquitin B.
    
 0.687
S4RR10_PETMA
Zinc finger, AN1-type domain 4.
    
 0.685
S4RZU8_PETMA
Ubiquitin protein ligase E3A.
   
 0.679
UBE2N
Ubiquitin conjugating enzyme E2 N.
    
  0.678
S4RRF8_PETMA
Uncharacterized protein.
    
 
 0.651
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
 0.650
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.