S4R7U8_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R7U8_PETMA

Syntrophin, gamma 2. (502 aa)

Predicted Functional Partners:

S4RTD0_PETMA

0.954

S4RAM2_PETMA

0.901

S4RDF2_PETMA

0.851

S4RKK7_PETMA

0.851

S4RP96_PETMA

0.833

S4RJR9_PETMA

0.793

S4RRM6_PETMA

0.793

S4R5D0_PETMA

0.769

S4RZE5_PETMA

0.769

S4R7T6_PETMA

0.752

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R5D0_PETMA	S4R7T6_PETMA	ENSPMAP00000000410	ENSPMAP00000001266	Uncharacterized protein.	Uncharacterized protein.	0.845
S4R5D0_PETMA	S4R7U8_PETMA	ENSPMAP00000000410	ENSPMAP00000001278	Uncharacterized protein.	Syntrophin, gamma 2.	0.769
S4R5D0_PETMA	S4RAM2_PETMA	ENSPMAP00000000410	ENSPMAP00000002253	Uncharacterized protein.	Sarcoglycan, gamma.	0.979
S4R5D0_PETMA	S4RDF2_PETMA	ENSPMAP00000000410	ENSPMAP00000003234	Uncharacterized protein.	Uncharacterized protein.	0.878
S4R5D0_PETMA	S4RJR9_PETMA	ENSPMAP00000000410	ENSPMAP00000005452	Uncharacterized protein.	Sarcoglycan, epsilon.	0.912
S4R5D0_PETMA	S4RKK7_PETMA	ENSPMAP00000000410	ENSPMAP00000005740	Uncharacterized protein.	Uncharacterized protein.	0.878
S4R5D0_PETMA	S4RRM6_PETMA	ENSPMAP00000000410	ENSPMAP00000007862	Uncharacterized protein.	Uncharacterized protein.	0.912
S4R5D0_PETMA	S4RTD0_PETMA	ENSPMAP00000000410	ENSPMAP00000008470	Uncharacterized protein.	Dystrobrevin.	0.880
S4R5D0_PETMA	S4RZE5_PETMA	ENSPMAP00000000410	ENSPMAP00000010586	Uncharacterized protein.	Dystroglycan 1.	0.909
S4R7T6_PETMA	S4R5D0_PETMA	ENSPMAP00000001266	ENSPMAP00000000410	Uncharacterized protein.	Uncharacterized protein.	0.845
S4R7T6_PETMA	S4R7U8_PETMA	ENSPMAP00000001266	ENSPMAP00000001278	Uncharacterized protein.	Syntrophin, gamma 2.	0.752
S4R7T6_PETMA	S4RAM2_PETMA	ENSPMAP00000001266	ENSPMAP00000002253	Uncharacterized protein.	Sarcoglycan, gamma.	0.811
S4R7T6_PETMA	S4RDF2_PETMA	ENSPMAP00000001266	ENSPMAP00000003234	Uncharacterized protein.	Uncharacterized protein.	0.807
S4R7T6_PETMA	S4RJR9_PETMA	ENSPMAP00000001266	ENSPMAP00000005452	Uncharacterized protein.	Sarcoglycan, epsilon.	0.705
S4R7T6_PETMA	S4RKK7_PETMA	ENSPMAP00000001266	ENSPMAP00000005740	Uncharacterized protein.	Uncharacterized protein.	0.807
S4R7T6_PETMA	S4RP96_PETMA	ENSPMAP00000001266	ENSPMAP00000007032	Uncharacterized protein.	Catenin (cadherin-associated protein), alpha-like 1.	0.653
S4R7T6_PETMA	S4RRM6_PETMA	ENSPMAP00000001266	ENSPMAP00000007862	Uncharacterized protein.	Uncharacterized protein.	0.705
S4R7T6_PETMA	S4RTD0_PETMA	ENSPMAP00000001266	ENSPMAP00000008470	Uncharacterized protein.	Dystrobrevin.	0.846
S4R7T6_PETMA	S4RZE5_PETMA	ENSPMAP00000001266	ENSPMAP00000010586	Uncharacterized protein.	Dystroglycan 1.	0.845
S4R7U8_PETMA	S4R5D0_PETMA	ENSPMAP00000001278	ENSPMAP00000000410	Syntrophin, gamma 2.	Uncharacterized protein.	0.769