Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
S4R7V8_PETMALysine (K)-specific demethylase 1a. (733 aa)    
Predicted Functional Partners:
PHF21A
PHD finger protein 21A.
    
 0.999
S4RWT0_PETMA
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.979
S4RAH0_PETMA
Uncharacterized protein.
    
 0.978
S4RIY0_PETMA
CHDNT domain-containing protein.
   
 0.966
S4RMF1_PETMA
REST corepressor 1.
    
 0.966
S4RP19_PETMA
REST corepressor 1.
    
 0.966
S4RVB7_PETMA
REST corepressor 3.
    
 0.966
S4RRX9_PETMA
Retinoblastoma binding protein 4, like.
   
 0.965
S4RL39_PETMA
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.962
S4RV40_PETMA
Hist_deacetyl domain-containing protein.
   
 0.961
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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