Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R7W3_PETMAUncharacterized protein. (850 aa)    
Predicted Functional Partners:
S4RR07_PETMA
Uncharacterized protein.
    
 0.936
S4R9Z7_PETMA
WD_REPEATS_REGION domain-containing protein.
 
     0.930
S4RQP8_PETMA
Rav1p_C domain-containing protein.
   
 
 0.840
S4RVJ9_PETMA
Rogdi atypical leucine zipper.
   
 
 0.829
ATP6V1G3
V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
    
 
 0.827
S4R840_PETMA
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
    
 
 0.752
S4R584_PETMA
Ski2_N domain-containing protein.
    
 0.708
S4RP71_PETMA
Uncharacterized protein.
   
 
 0.699
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.686
ONECUT3
One cut homeobox 3.
      
 0.631
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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