Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R7Y6_PETMAYip1 interacting factor homolog A (S. cerevisiae). (245 aa)    
Predicted Functional Partners:
S4RTX4_PETMA
Protein YIPF.
   
 
 0.935
S4RIF1_PETMA
PRA1 family protein.
   
 
 0.903
S4REB6_PETMA
Protein YIPF.
   
 
 0.870
S4R9V8_PETMA
ZRAB1B, member RAS oncogene family a.
   
 
 0.809
S4RSM9_PETMA
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
   0.693
KDELR1
ER lumen protein-retaining receptor.
   
 
 0.674
KDELR1-2
ER lumen protein-retaining receptor.
   
 
 0.674
S4RRZ3_PETMA
RAB33B, member RAS oncogene family a.
    
 
 0.657
S4RSD8_PETMA
Transmembrane protein 41aa.
      
 0.546
S4R6V9_PETMA
Receptor expression-enhancing protein.
    
 
 0.538
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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