Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R7Y8_PETMASi:ch211-15b10.6. (166 aa)    
Predicted Functional Partners:
S4RMR7_PETMA
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.996
S4RS66_PETMA
TNF receptor-associated factor.
    
 0.947
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.830
S4RQI9_PETMA
Rho guanine nucleotide exchange factor (GEF) 39.
    
   0.820
UBB
Ubiquitin B.
    
  0.798
S4R4E5_PETMA
TNF receptor-associated factor.
    
 0.778
S4RCZ8_PETMA
Baculoviral IAP repeat containing 2.
    
 
 0.734
S4RT09_PETMA
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.627
S4RCK5_PETMA
Uncharacterized protein.
     
  0.555
S4RD88_PETMA
YrdC N(6)-threonylcarbamoyltransferase domain containing.
      
 0.554
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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