STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R7Z0_PETMAUncharacterized protein. (193 aa)    
Predicted Functional Partners:
S4RBX4_PETMA
Solute carrier family 33 member 1.
 
      0.900
S4RQU7_PETMA
Thymidylate synthetase.
    
 0.573
S4RS80_PETMA
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
    
  0.555
S4RDB2_PETMA
Eukaryotic translation initiation factor 2B, subunit 2 beta; Belongs to the eIF-2B alpha/beta/delta subunits family.
 
  
  0.552
S4RYF8_PETMA
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.549
S4S1D7_PETMA
Glyceraldehyde-3-phosphate dehydrogenase.
    
 0.549
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
    
  0.486
S4R4K6_PETMA
Nucleoside diphosphate kinase.
     
  0.478
S4R4Z0_PETMA
NME/NM23 nucleoside diphosphate kinase 6; Belongs to the NDK family.
     
  0.478
S4RIY8_PETMA
Mitochondrial ribosomal protein S34.
     
  0.478
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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