STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX49DEAD-box helicase 49; Belongs to the DEAD box helicase family. (467 aa)    
Predicted Functional Partners:
ABT1
Activator of basal transcription 1.
   
 
 0.985
S4R5N2_PETMA
WD repeat domain 46.
   
 0.978
S4RR36_PETMA
Spb1_C domain-containing protein.
   
 0.966
S4RIA6_PETMA
Neuroguidin, EIF4E binding protein.
   
 0.965
S4RDW7_PETMA
Uncharacterized protein.
  
 0.962
S4R776_PETMA
Bystin-like.
   
 
 0.961
S4RND1_PETMA
WD repeat domain 43.
   
 0.961
S4RPS6_PETMA
UTP25 small subunit processor component.
   
 
 0.956
S4RSV3_PETMA
Pescadillo.
   
 0.946
S4REJ8_PETMA
NOP14 nucleolar protein homolog (yeast).
   
 0.945
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.