STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX49DEAD-box helicase 49; Belongs to the DEAD box helicase family. (467 aa)    
Predicted Functional Partners:
S4R5N2_PETMA
WD repeat domain 46.
   
 0.989
S4R776_PETMA
Bystin-like.
   
 
 0.989
S4RPS6_PETMA
UTP25 small subunit processor component.
   
 0.988
S4REJ8_PETMA
NOP14 nucleolar protein homolog (yeast).
   
 0.983
S4RDW7_PETMA
Uncharacterized protein.
  
 0.982
S4RF47_PETMA
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 0.979
S4RXD7_PETMA
ZP domain-containing protein.
   
 0.977
S4R4T7_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family.
   
 0.975
ABT1
Activator of basal transcription 1.
   
 
 0.968
FCF1
FCF1 rRNA-processing protein.
   
 0.956
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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