Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R811_PETMAUncharacterized protein. (284 aa)    
Predicted Functional Partners:
S4RAB0_PETMA
Serine/threonine-protein phosphatase.
    
   0.670
SUV39H2
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
    
 
 0.616
S4RM09_PETMA
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
      
 0.599
S4R6E9_PETMA
Uncharacterized protein.
    
   0.486
S4RFX6_PETMA
Uncharacterized protein.
    
   0.486
S4RU18_PETMA
Uncharacterized protein.
    
   0.486
S4RVM5_PETMA
Uncharacterized protein.
    
   0.486
AFMID
Kynurenine formamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. Kynurenine may be further oxidized to nicotinic acid, NAD(H) and NADP(H). Required for elimination of toxic metabolites.
      
 0.459
S4RHI6_PETMA
4F5 domain-containing protein.
      
 0.458
S4RP18_PETMA
Eukaryotic translation termination factor 1a.
      
 0.458
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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