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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R822_PETMAUncharacterized protein. (283 aa)    
Predicted Functional Partners:
S4R824_PETMA
Uncharacterized protein.
 
     0.949
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
 0.711
S4R6H0_PETMA
Uncharacterized protein; Belongs to the cytochrome P450 family.
    
 0.660
S4S057_PETMA
Si:ch211-113j14.1; Belongs to the cytochrome P450 family.
    
 0.660
S4RSZ5_PETMA
BUB3 mitotic checkpoint protein.
    
 0.604
S4R661_PETMA
CAP-Gly domain-containing protein.
    
 0.587
S4RQY1_PETMA
Microtubule-associated protein, RP/EB family, member 3b.
    
 
 0.585
ENSPMAP00000010978
annotation not available
    
 
 0.585
S4REI3_PETMA
Baculoviral IAP repeat containing 6.
  
 0.548
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.481
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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