S4R825_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R825_PETMA

Myotubularin 1. (587 aa)

Predicted Functional Partners:

S4RNW0_PETMA

0.973

S4RXT6_PETMA

0.973

FIG4

0.966

S4RQC4_PETMA

0.958

S4RAR0_PETMA

0.957

S4RF73_PETMA

0.943

S4RVK1_PETMA

0.926

S4RLV0_PETMA

0.917

S4RUP9_PETMA

0.913

PLCB1-2

0.908

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FIG4	S4R825_PETMA	ENSPMAP00000006597	ENSPMAP00000001355	FIG4 phosphoinositide 5-phosphatase.	Myotubularin 1.	0.966
FIG4	S4RAR0_PETMA	ENSPMAP00000006597	ENSPMAP00000002291	FIG4 phosphoinositide 5-phosphatase.	Phosphatidylinositol 3-kinase, catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	0.937
FIG4	S4RF73_PETMA	ENSPMAP00000006597	ENSPMAP00000003855	FIG4 phosphoinositide 5-phosphatase.	PIPK domain-containing protein.	0.998
FIG4	S4RQC4_PETMA	ENSPMAP00000006597	ENSPMAP00000007410	FIG4 phosphoinositide 5-phosphatase.	Myotubularin related protein 8.	0.923
FIG4	S4RVK1_PETMA	ENSPMAP00000006597	ENSPMAP00000009241	FIG4 phosphoinositide 5-phosphatase.	SAC domain-containing protein.	0.465
PLCB1-2	S4R825_PETMA	ENSPMAP00000010152	ENSPMAP00000001355	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Myotubularin 1.	0.908
PLCB1-2	S4RAR0_PETMA	ENSPMAP00000010152	ENSPMAP00000002291	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Phosphatidylinositol 3-kinase, catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	0.904
PLCB1-2	S4RF73_PETMA	ENSPMAP00000010152	ENSPMAP00000003855	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	PIPK domain-containing protein.	0.900
PLCB1-2	S4RNW0_PETMA	ENSPMAP00000010152	ENSPMAP00000006896	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.900
PLCB1-2	S4RQC4_PETMA	ENSPMAP00000010152	ENSPMAP00000007410	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Myotubularin related protein 8.	0.902
PLCB1-2	S4RUP9_PETMA	ENSPMAP00000010152	ENSPMAP00000008939	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.903
PLCB1-2	S4RVK1_PETMA	ENSPMAP00000010152	ENSPMAP00000009241	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	SAC domain-containing protein.	0.900
PLCB1-2	S4RXT6_PETMA	ENSPMAP00000010152	ENSPMAP00000010027	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.900
S4R825_PETMA	FIG4	ENSPMAP00000001355	ENSPMAP00000006597	Myotubularin 1.	FIG4 phosphoinositide 5-phosphatase.	0.966
S4R825_PETMA	PLCB1-2	ENSPMAP00000001355	ENSPMAP00000010152	Myotubularin 1.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.908
S4R825_PETMA	S4RAR0_PETMA	ENSPMAP00000001355	ENSPMAP00000002291	Myotubularin 1.	Phosphatidylinositol 3-kinase, catalytic subunit type 3; Belongs to the PI3/PI4-kinase family.	0.957
S4R825_PETMA	S4RF73_PETMA	ENSPMAP00000001355	ENSPMAP00000003855	Myotubularin 1.	PIPK domain-containing protein.	0.943
S4R825_PETMA	S4RLV0_PETMA	ENSPMAP00000001355	ENSPMAP00000006186	Myotubularin 1.	UDENN domain-containing protein.	0.917
S4R825_PETMA	S4RNW0_PETMA	ENSPMAP00000001355	ENSPMAP00000006896	Myotubularin 1.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.973
S4R825_PETMA	S4RQC4_PETMA	ENSPMAP00000001355	ENSPMAP00000007410	Myotubularin 1.	Myotubularin related protein 8.	0.958