Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R829_PETMAUncharacterized protein. (2032 aa)    
Predicted Functional Partners:
S4R6A4_PETMA
Uncharacterized protein.
 
     0.950
S4RGX4_PETMA
Dynein_C domain-containing protein.
 
   
  0.943
S4RYH4_PETMA
Uncharacterized protein.
 
   0.940
S4RZV4_PETMA
Uncharacterized protein.
 
  
   0.926
S4RKH5_PETMA
Uncharacterized protein.
 
     0.918
S4RI00_PETMA
DHC_N1 domain-containing protein.
 
      0.899
S4RHX2_PETMA
Uncharacterized protein.
    
 
 0.827
DCTN1
Dynactin subunit 1.
   
 0.805
S4RTD7_PETMA
Platelet-activating factor acetylhydrolase 1b, regulatory subunit 1b.
    
 0.792
S4RJI4_PETMA
Dynein, axonemal, intermediate chain 2b.
   
 0.781
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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