S4R836_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R836_PETMA

N-acetyltransferase domain-containing protein. (154 aa)

Predicted Functional Partners:

NAA10

0.979

S4RLR8_PETMA

0.979

S4RYS1_PETMA

0.968

S4R481_PETMA

0.857

S4REE3_PETMA

0.853

S4RMW7_PETMA

0.851

S4RPR2_PETMA

0.841

S4R8I1_PETMA

0.806

S4RN23_PETMA

0.771

S4R9U8_PETMA

0.748

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAA10	S4R481_PETMA	ENSPMAP00000002876	ENSPMAP00000000010	N(alpha)-acetyltransferase 10, NatA catalytic subunit.	K(lysine) acetyltransferase 2B.	0.478
NAA10	S4R836_PETMA	ENSPMAP00000002876	ENSPMAP00000001367	N(alpha)-acetyltransferase 10, NatA catalytic subunit.	N-acetyltransferase domain-containing protein.	0.979
NAA10	S4RLR8_PETMA	ENSPMAP00000002876	ENSPMAP00000006154	N(alpha)-acetyltransferase 10, NatA catalytic subunit.	N(alpha)-acetyltransferase 15, NatA auxiliary subunit b.	0.988
NAA10	S4RPR2_PETMA	ENSPMAP00000002876	ENSPMAP00000007198	N(alpha)-acetyltransferase 10, NatA catalytic subunit.	N(alpha)-acetyltransferase 20, NatB catalytic subunit.	0.798
NAA10	S4RYS1_PETMA	ENSPMAP00000002876	ENSPMAP00000010362	N(alpha)-acetyltransferase 10, NatA catalytic subunit.	Huntingtin interacting protein K.	0.989
S4R481_PETMA	NAA10	ENSPMAP00000000010	ENSPMAP00000002876	K(lysine) acetyltransferase 2B.	N(alpha)-acetyltransferase 10, NatA catalytic subunit.	0.478
S4R481_PETMA	S4R836_PETMA	ENSPMAP00000000010	ENSPMAP00000001367	K(lysine) acetyltransferase 2B.	N-acetyltransferase domain-containing protein.	0.857
S4R481_PETMA	S4R9U8_PETMA	ENSPMAP00000000010	ENSPMAP00000001979	K(lysine) acetyltransferase 2B.	MAP3K12 binding inhibitory protein 1.	0.987
S4R481_PETMA	S4REE3_PETMA	ENSPMAP00000000010	ENSPMAP00000003575	K(lysine) acetyltransferase 2B.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.999
S4R481_PETMA	S4RMW7_PETMA	ENSPMAP00000000010	ENSPMAP00000006553	K(lysine) acetyltransferase 2B.	Uncharacterized protein.	0.977
S4R836_PETMA	NAA10	ENSPMAP00000001367	ENSPMAP00000002876	N-acetyltransferase domain-containing protein.	N(alpha)-acetyltransferase 10, NatA catalytic subunit.	0.979
S4R836_PETMA	S4R481_PETMA	ENSPMAP00000001367	ENSPMAP00000000010	N-acetyltransferase domain-containing protein.	K(lysine) acetyltransferase 2B.	0.857
S4R836_PETMA	S4R8I1_PETMA	ENSPMAP00000001367	ENSPMAP00000001512	N-acetyltransferase domain-containing protein.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.	0.806
S4R836_PETMA	S4R9U8_PETMA	ENSPMAP00000001367	ENSPMAP00000001979	N-acetyltransferase domain-containing protein.	MAP3K12 binding inhibitory protein 1.	0.748
S4R836_PETMA	S4REE3_PETMA	ENSPMAP00000001367	ENSPMAP00000003575	N-acetyltransferase domain-containing protein.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.853
S4R836_PETMA	S4RLR8_PETMA	ENSPMAP00000001367	ENSPMAP00000006154	N-acetyltransferase domain-containing protein.	N(alpha)-acetyltransferase 15, NatA auxiliary subunit b.	0.979
S4R836_PETMA	S4RMW7_PETMA	ENSPMAP00000001367	ENSPMAP00000006553	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.851
S4R836_PETMA	S4RN23_PETMA	ENSPMAP00000001367	ENSPMAP00000006609	N-acetyltransferase domain-containing protein.	N(alpha)-acetyltransferase 38, NatC auxiliary subunit.	0.771
S4R836_PETMA	S4RPR2_PETMA	ENSPMAP00000001367	ENSPMAP00000007198	N-acetyltransferase domain-containing protein.	N(alpha)-acetyltransferase 20, NatB catalytic subunit.	0.841
S4R836_PETMA	S4RYS1_PETMA	ENSPMAP00000001367	ENSPMAP00000010362	N-acetyltransferase domain-containing protein.	Huntingtin interacting protein K.	0.968