S4R846_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R846_PETMA

GST C-terminal domain-containing protein. (76 aa)

Predicted Functional Partners:

S4R4M6_PETMA

0.863

S4R4M7_PETMA

0.863

S4RHA9_PETMA

0.854

S4RSL0_PETMA

0.820

S4RS68_PETMA

0.818

S4RJL1_PETMA

0.778

S4R9T3_PETMA

0.700

S4RT48_PETMA

0.697

S4RZZ3_PETMA

0.695

S4RK12_PETMA

0.659

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R4M6_PETMA	S4R4M7_PETMA	ENSPMAP00000000155	ENSPMAP00000000156	ProRS-C_1 domain-containing protein.	Uncharacterized protein.	0.999
S4R4M6_PETMA	S4R846_PETMA	ENSPMAP00000000155	ENSPMAP00000001377	ProRS-C_1 domain-containing protein.	GST C-terminal domain-containing protein.	0.863
S4R4M6_PETMA	S4RK12_PETMA	ENSPMAP00000000155	ENSPMAP00000005545	ProRS-C_1 domain-containing protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.980
S4R4M6_PETMA	S4RSL0_PETMA	ENSPMAP00000000155	ENSPMAP00000008200	ProRS-C_1 domain-containing protein.	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	0.999
S4R4M6_PETMA	S4RT48_PETMA	ENSPMAP00000000155	ENSPMAP00000008388	ProRS-C_1 domain-containing protein.	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	0.649
S4R4M7_PETMA	S4R4M6_PETMA	ENSPMAP00000000156	ENSPMAP00000000155	Uncharacterized protein.	ProRS-C_1 domain-containing protein.	0.999
S4R4M7_PETMA	S4R846_PETMA	ENSPMAP00000000156	ENSPMAP00000001377	Uncharacterized protein.	GST C-terminal domain-containing protein.	0.863
S4R4M7_PETMA	S4RK12_PETMA	ENSPMAP00000000156	ENSPMAP00000005545	Uncharacterized protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.980
S4R4M7_PETMA	S4RSL0_PETMA	ENSPMAP00000000156	ENSPMAP00000008200	Uncharacterized protein.	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	0.999
S4R4M7_PETMA	S4RT48_PETMA	ENSPMAP00000000156	ENSPMAP00000008388	Uncharacterized protein.	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	0.649
S4R846_PETMA	S4R4M6_PETMA	ENSPMAP00000001377	ENSPMAP00000000155	GST C-terminal domain-containing protein.	ProRS-C_1 domain-containing protein.	0.863
S4R846_PETMA	S4R4M7_PETMA	ENSPMAP00000001377	ENSPMAP00000000156	GST C-terminal domain-containing protein.	Uncharacterized protein.	0.863
S4R846_PETMA	S4R9T3_PETMA	ENSPMAP00000001377	ENSPMAP00000001964	GST C-terminal domain-containing protein.	Uncharacterized protein.	0.700
S4R846_PETMA	S4RHA9_PETMA	ENSPMAP00000001377	ENSPMAP00000004591	GST C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.854
S4R846_PETMA	S4RJL1_PETMA	ENSPMAP00000001377	ENSPMAP00000005394	GST C-terminal domain-containing protein.	Uncharacterized protein.	0.778
S4R846_PETMA	S4RK12_PETMA	ENSPMAP00000001377	ENSPMAP00000005545	GST C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.659
S4R846_PETMA	S4RS68_PETMA	ENSPMAP00000001377	ENSPMAP00000008057	GST C-terminal domain-containing protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.818
S4R846_PETMA	S4RSL0_PETMA	ENSPMAP00000001377	ENSPMAP00000008200	GST C-terminal domain-containing protein.	Eukaryotic translation elongation factor 1 gamma; Belongs to the GST superfamily.	0.820
S4R846_PETMA	S4RT48_PETMA	ENSPMAP00000001377	ENSPMAP00000008388	GST C-terminal domain-containing protein.	Eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein); Belongs to the EF-1-beta/EF-1-delta family.	0.697
S4R846_PETMA	S4RZZ3_PETMA	ENSPMAP00000001377	ENSPMAP00000010784	GST C-terminal domain-containing protein.	Glutathione S-transferase kappa.	0.695