S4R847_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R847_PETMA

Uncharacterized protein. (348 aa)

Predicted Functional Partners:

S4RQ34_PETMA

0.774

S4RG48_PETMA

0.758

S4RI70_PETMA

0.706

S4R872_PETMA

0.685

S4RU51_PETMA

0.664

S4RZ66_PETMA

0.662

S4RDZ9_PETMA

0.652

S4RFN8_PETMA

0.648

S4RP34_PETMA

0.635

S4RG76_PETMA

0.626

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R847_PETMA	S4R872_PETMA	ENSPMAP00000001378	ENSPMAP00000001403	Uncharacterized protein.	Arm_2 domain-containing protein.	0.685
S4R847_PETMA	S4RDZ9_PETMA	ENSPMAP00000001378	ENSPMAP00000003431	Uncharacterized protein.	Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein.	0.652
S4R847_PETMA	S4RFN8_PETMA	ENSPMAP00000001378	ENSPMAP00000004020	Uncharacterized protein.	ANF_receptor domain-containing protein.	0.648
S4R847_PETMA	S4RG48_PETMA	ENSPMAP00000001378	ENSPMAP00000004180	Uncharacterized protein.	Ubiquitin-like with PHD and ring finger domains 1.	0.758
S4R847_PETMA	S4RG76_PETMA	ENSPMAP00000001378	ENSPMAP00000004208	Uncharacterized protein.	Coiled-coil-helix-coiled-coil-helix domain containing 4b.	0.626
S4R847_PETMA	S4RI70_PETMA	ENSPMAP00000001378	ENSPMAP00000004902	Uncharacterized protein.	Uncharacterized protein.	0.706
S4R847_PETMA	S4RP34_PETMA	ENSPMAP00000001378	ENSPMAP00000006970	Uncharacterized protein.	Protein phosphatase 2, regulatory subunit B, gamma b.	0.635
S4R847_PETMA	S4RQ34_PETMA	ENSPMAP00000001378	ENSPMAP00000007320	Uncharacterized protein.	Formimidoyltransferase cyclodeaminase.	0.774
S4R847_PETMA	S4RU51_PETMA	ENSPMAP00000001378	ENSPMAP00000008741	Uncharacterized protein.	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.	0.664
S4R847_PETMA	S4RZ66_PETMA	ENSPMAP00000001378	ENSPMAP00000010507	Uncharacterized protein.	SUZ12 polycomb repressive complex 2 subunit a.	0.662
S4R872_PETMA	S4R847_PETMA	ENSPMAP00000001403	ENSPMAP00000001378	Arm_2 domain-containing protein.	Uncharacterized protein.	0.685
S4R872_PETMA	S4RP34_PETMA	ENSPMAP00000001403	ENSPMAP00000006970	Arm_2 domain-containing protein.	Protein phosphatase 2, regulatory subunit B, gamma b.	0.649
S4RDZ9_PETMA	S4R847_PETMA	ENSPMAP00000003431	ENSPMAP00000001378	Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein.	Uncharacterized protein.	0.652
S4RDZ9_PETMA	S4RG76_PETMA	ENSPMAP00000003431	ENSPMAP00000004208	Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein.	Coiled-coil-helix-coiled-coil-helix domain containing 4b.	0.643
S4RFN8_PETMA	S4R847_PETMA	ENSPMAP00000004020	ENSPMAP00000001378	ANF_receptor domain-containing protein.	Uncharacterized protein.	0.648
S4RFN8_PETMA	S4RG48_PETMA	ENSPMAP00000004020	ENSPMAP00000004180	ANF_receptor domain-containing protein.	Ubiquitin-like with PHD and ring finger domains 1.	0.652
S4RG48_PETMA	S4R847_PETMA	ENSPMAP00000004180	ENSPMAP00000001378	Ubiquitin-like with PHD and ring finger domains 1.	Uncharacterized protein.	0.758
S4RG48_PETMA	S4RFN8_PETMA	ENSPMAP00000004180	ENSPMAP00000004020	Ubiquitin-like with PHD and ring finger domains 1.	ANF_receptor domain-containing protein.	0.652
S4RG76_PETMA	S4R847_PETMA	ENSPMAP00000004208	ENSPMAP00000001378	Coiled-coil-helix-coiled-coil-helix domain containing 4b.	Uncharacterized protein.	0.626
S4RG76_PETMA	S4RDZ9_PETMA	ENSPMAP00000004208	ENSPMAP00000003431	Coiled-coil-helix-coiled-coil-helix domain containing 4b.	Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein.	0.643