Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R848_PETMAUncharacterized protein. (406 aa)    
Predicted Functional Partners:
S4R481_PETMA
K(lysine) acetyltransferase 2B.
    
 0.999
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
   
 0.994
S4RNK7_PETMA
Proteasome 26S subunit, ATPase 1a.
   
 0.992
S4RNT3_PETMA
Proteasome 26S subunit, non-ATPase 6.
   
 0.990
S4RR10_PETMA
Zinc finger, AN1-type domain 4.
   
 0.990
S4RVB6_PETMA
Proteasome 26S subunit, non-ATPase 13.
   
 0.990
S4RW24_PETMA
Proteasome 26S subunit, non-ATPase 7.
   
 0.990
S4RDQ3_PETMA
Proteasome 26S subunit, non-ATPase 4a.
   
 0.989
S4RU94_PETMA
Proteasome subunit beta.
   
 0.989
S4RYG2_PETMA
Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.
  
 0.989
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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