Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R853_PETMAUncharacterized protein. (256 aa)    
Predicted Functional Partners:
S4RHX4_PETMA
Cullin 1b; Belongs to the cullin family.
    
 0.993
S4RUD3_PETMA
F-box and WD repeat domain containing 7.
    
 0.942
S4RTZ6_PETMA
Cyclin D2, b; Belongs to the cyclin family.
    
 
 0.898
S4RR98_PETMA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.867
S4R7H3_PETMA
F-box protein 9.
    
 
 0.822
CCNF
Cyclin F; Belongs to the cyclin family.
    
 0.763
S4RFL1_PETMA
F-box protein 7.
    
 0.714
S4RCX6_PETMA
Cullin 2; Belongs to the cullin family.
     
 0.679
S4R5A8_PETMA
TM2 domain containing 1.
   
  
 0.677
DCAF7
Ddb1 and cul4 associated factor 7.
     
 0.657
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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