Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R854_PETMAUncharacterized protein. (354 aa)    
Predicted Functional Partners:
S4RBB3_PETMA
Receptor for activated C kinase 1.
    
 
 0.848
S4R9L7_PETMA
Calponin-homology (CH) domain-containing protein.
    
   0.589
S4RG46_PETMA
Uncharacterized protein.
    
   0.589
S4RPV3_PETMA
Uncharacterized protein.
    
   0.589
S4RR46_PETMA
HECT domain containing 1.
   
   0.473
S4RZZ5_PETMA
SAP domain containing ribonucleoprotein.
      
 0.449
S4RL30_PETMA
La ribonucleoprotein domain family, member 7.
      
 0.438
LACTB2
Lactamase beta 2.
      
 0.435
S4RGR4_PETMA
Uncharacterized protein.
  
     0.419
S4RCP5_PETMA
La ribonucleoprotein domain family, member 1B.
   
 
 0.417
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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