Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R855_PETMAUncharacterized protein. (250 aa)    
Predicted Functional Partners:
IST1
IST1 factor associated with ESCRT-III.
    
   0.968
S4RNW4_PETMA
Galectin.
    
   0.718
S4RM31_PETMA
EF-hand domain-containing protein.
    
 
 0.678
S4RF47_PETMA
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
      
 0.673
S4RSM1_PETMA
Uncharacterized protein.
   
 
 0.664
S4REV3_PETMA
Aminoacylase 1.
   
  
 0.616
S4RJF2_PETMA
Sema domain-containing protein.
      
 0.613
S4RWV5_PETMA
Protein kinase domain-containing protein.
      
 0.613
S4RNY0_PETMA
Leucine aminopeptidase 3.
   
  
 0.612
S4RCN5_PETMA
Uroporphyrinogen decarboxylase.
   
 
 0.606
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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