STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R860_PETMABiotinidase. (481 aa)    
Predicted Functional Partners:
S4R6I4_PETMA
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.847
HLCS
Holocarboxylase synthetase.
    
 0.840
S4RKS5_PETMA
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 
 0.835
S4R9W5_PETMA
Arginase.
  
 0.786
S4RYJ6_PETMA
Sorbitol dehydrogenase.
  
 0.786
S4RTF2_PETMA
Glutamine synthetase.
    
 0.771
S4RGA8_PETMA
Uncharacterized protein.
    
 0.770
S4R9T3_PETMA
Uncharacterized protein.
   
 0.763
S4R485_PETMA
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
    
  0.759
S4R9M4_PETMA
Aspartate aminotransferase.
     
 0.755
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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