Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R862_PETMAZinc finger CCHC-type and RNA binding motif 1. (195 aa)    
Predicted Functional Partners:
S4RFZ6_PETMA
RNA-binding region (RNP1, RRM) containing 3.
    
 0.998
S4R8C8_PETMA
Splicing factor 3b, subunit 1.
    
 0.989
S4RQ08_PETMA
Splicing factor 3b, subunit 2.
    
 0.969
S4R4A6_PETMA
Small nuclear ribonucleoprotein G.
    
 0.956
S4RL30_PETMA
La ribonucleoprotein domain family, member 7.
   
 
 0.943
S4RVW8_PETMA
Small nuclear ribonucleoprotein 70 (U1).
    
 0.938
SF3B2
Splicing factor 3b subunit 2.
    
 0.937
S4R9W9_PETMA
Splicing factor 3b, subunit 3.
    
  0.924
S4RTT9_PETMA
Splicing factor 3b, subunit 4.
    
 0.924
S4S1D5_PETMA
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
  0.902
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.