STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R862_PETMAZinc finger CCHC-type and RNA binding motif 1. (195 aa)    
Predicted Functional Partners:
S4RFZ6_PETMA
RNA-binding region (RNP1, RRM) containing 3.
    
 0.886
S4R8C8_PETMA
Splicing factor 3b, subunit 1.
    
 0.808
S4RSP5_PETMA
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.806
S4RGF7_PETMA
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.803
S4R4A6_PETMA
Small nuclear ribonucleoprotein G.
    
 0.795
S4R9W9_PETMA
Splicing factor 3b, subunit 3.
    
 0.760
S4RTT9_PETMA
Splicing factor 3b, subunit 4.
    
 0.760
S4RN41_PETMA
RRM domain-containing protein.
    
  0.749
S4S1D5_PETMA
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.731
S4RLU8_PETMA
DEAD (Asp-Glu-Ala-Asp) box helicase 42; Belongs to the DEAD box helicase family.
    
 0.728
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.