Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MYOM1Myomesin 1b. (1430 aa)    
Predicted Functional Partners:
MYOM1-2
Uncharacterized protein.
  
 
 
0.919
S4RHS5_PETMA
Uncharacterized protein.
  
  
 
0.905
S4R5E8_PETMA
Zinc finger and BTB domain containing 14.
    
 0.527
S4R848_PETMA
Uncharacterized protein.
    
  0.515
S4RF48_PETMA
Growth arrest-specific 7a.
    
 0.502
S4RM85_PETMA
ARID domain-containing protein.
    
 0.502
S4RN39_PETMA
AT rich interactive domain 4A (RBP1-like).
    
 0.502
S4R6A8_PETMA
ZP domain-containing protein.
  
 
  0.500
S4RZ99_PETMA
ZP domain-containing protein.
  
 
  0.499
S4R719_PETMA
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.478
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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