Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R872_PETMAArm_2 domain-containing protein. (210 aa)    
Predicted Functional Partners:
POP1
Uncharacterized protein.
    
 
 0.707
S4R847_PETMA
Uncharacterized protein.
    
 
 0.685
S4RKJ2_PETMA
Uncharacterized protein.
    
 
 0.675
S4RV35_PETMA
Karyopherin (importin) beta 3.
    
   0.666
S4R6D0_PETMA
Nipsnap homolog 1 (C. elegans).
    
 
 0.654
S4S061_PETMA
Nucleoredoxin.
    
 
 0.653
S4RP34_PETMA
Protein phosphatase 2, regulatory subunit B, gamma b.
    
 0.649
S4RKG2_PETMA
Armadillo repeat containing 7.
      
 0.640
S4RWT3_PETMA
Armadillo repeat containing 8.
     
 0.630
S4RHA9_PETMA
Uncharacterized protein; Belongs to the GST superfamily.
      
 0.627
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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