Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R873_PETMAUncharacterized protein. (150 aa)    
Predicted Functional Partners:
S4RW32_PETMA
Transmembrane protein 53.
      
 0.877
S4RB21_PETMA
NDC1 transmembrane nucleoporin.
   
  
 0.873
S4RMF3_PETMA
Nucleoporin 58.
   
   0.868
S4RBH0_PETMA
Mannosyltransferase.
   
  
 0.717
S4RGL8_PETMA
Transmembrane protein 214.
      
 0.706
S4R921_PETMA
Transmembrane protein 161B.
      
 0.645
S4RKW6_PETMA
TMEM9 domain family, member B.
      
 0.631
S4RSJ9_PETMA
Thioredoxin domain-containing protein.
      
 0.631
S4RS55_PETMA
Zgc:172341.
      
 0.630
ERMP1
Endoplasmic reticulum metallopeptidase 1.
      
 0.628
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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