Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
S4R876_PETMAFERM domain-containing protein. (259 aa)    
Predicted Functional Partners:
S4RF34_PETMA
FERM domain-containing protein.
 
   
 0.883
S4R8R1_PETMA
FERM domain-containing protein.
 
   
 0.671
MPP5
Membrane palmitoylated protein 5.
    
 0.544
S4RHJ8_PETMA
Membrane palmitoylated protein 2; Belongs to the MAGUK family.
    
 0.517
S4RTA4_PETMA
Membrane palmitoylated protein 2; Belongs to the MAGUK family.
    
 0.517
S4RT57_PETMA
Membrane protein, palmitoylated 7a (MAGUK p55 subfamily member 7); Belongs to the MAGUK family.
    
 0.469
S4RH14_PETMA
Tetraspanin.
  
   
 0.445
S4RS71_PETMA
Nucleolar protein interacting with the FHA domain of MKI67.
      
 0.443
S4RTR8_PETMA
Ankyrin repeat domain 33Bb.
    
 0.431
S4RND2_PETMA
Calcium/calmodulin-dependent protein kinase II alpha.
   
 
  0.423
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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