STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R878_PETMAUncharacterized protein. (156 aa)    
Predicted Functional Partners:
S4RV88_PETMA
Mothers against decapentaplegic homolog.
    
 0.649
S4S011_PETMA
Von Hippel-Lindau tumor suppressor like.
    
  0.585
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
    
 0.583
S4R9Z1_PETMA
Pax2_C domain-containing protein.
    
 0.558
S4R5F3_PETMA
RunxI domain-containing protein.
    
 0.551
S4R848_PETMA
Uncharacterized protein.
    
  0.548
S4RX66_PETMA
LIM homeobox 1b.
    
 0.521
S4RHM5_PETMA
UDENN FNIP1/2-type domain-containing protein.
    
 0.490
S4RFH9_PETMA
Speckle type BTB/POZ protein like a.
   
  0.483
S4RME2_PETMA
Uncharacterized protein.
   
  0.483
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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