Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R888_PETMAUDENN domain-containing protein. (264 aa)    
Predicted Functional Partners:
SLC35D1
Solute carrier family 35 member D1.
 
      0.665
S4R4H4_PETMA
Solute carrier family 24 member 6a; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
   
  
 0.641
SLC35D1-2
Solute carrier family 35 member D1.
 
      0.639
S4RIK0_PETMA
Zinc finger, matrin-type 4a.
      
 0.635
S4RUS8_PETMA
UDENN domain-containing protein.
    
 
 0.566
S4RBK7_PETMA
Uncharacterized protein.
     
 0.505
S4RH89_PETMA
Uncharacterized protein.
     
 0.505
S4R9A9_PETMA
Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
   
  
 0.466
S4RWG6_PETMA
Uncharacterized protein.
      
 0.461
S4RFA7_PETMA
DENN/MADD domain containing 4A.
    
 
 0.443
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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