S4R891_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R891_PETMA

Uncharacterized protein. (369 aa)

Predicted Functional Partners:

S4RS81_PETMA

0.583

S4R848_PETMA

0.548

S4RFH9_PETMA

0.483

S4RME2_PETMA

0.483

S4RM85_PETMA

0.438

S4RN39_PETMA

0.438

S4RLW9_PETMA

0.436

ENSPMAP00000008984

0.436

S4RUR2_PETMA

0.426

S4RQ83_PETMA

0.420

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMAP00000008984	S4R891_PETMA	ENSPMAP00000008984	ENSPMAP00000001422	annotation not available	Uncharacterized protein.	0.436
S4R848_PETMA	S4R891_PETMA	ENSPMAP00000001379	ENSPMAP00000001422	Uncharacterized protein.	Uncharacterized protein.	0.548
S4R848_PETMA	S4RFH9_PETMA	ENSPMAP00000001379	ENSPMAP00000003961	Uncharacterized protein.	Speckle type BTB/POZ protein like a.	0.494
S4R848_PETMA	S4RM85_PETMA	ENSPMAP00000001379	ENSPMAP00000006321	Uncharacterized protein.	ARID domain-containing protein.	0.726
S4R848_PETMA	S4RME2_PETMA	ENSPMAP00000001379	ENSPMAP00000006378	Uncharacterized protein.	Uncharacterized protein.	0.494
S4R848_PETMA	S4RN39_PETMA	ENSPMAP00000001379	ENSPMAP00000006625	Uncharacterized protein.	AT rich interactive domain 4A (RBP1-like).	0.726
S4R848_PETMA	S4RQ83_PETMA	ENSPMAP00000001379	ENSPMAP00000007369	Uncharacterized protein.	Tonsoku-like, DNA repair protein.	0.715
S4R848_PETMA	S4RUR2_PETMA	ENSPMAP00000001379	ENSPMAP00000008952	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.667
S4R891_PETMA	ENSPMAP00000008984	ENSPMAP00000001422	ENSPMAP00000008984	Uncharacterized protein.	annotation not available	0.436
S4R891_PETMA	S4R848_PETMA	ENSPMAP00000001422	ENSPMAP00000001379	Uncharacterized protein.	Uncharacterized protein.	0.548
S4R891_PETMA	S4RFH9_PETMA	ENSPMAP00000001422	ENSPMAP00000003961	Uncharacterized protein.	Speckle type BTB/POZ protein like a.	0.483
S4R891_PETMA	S4RLW9_PETMA	ENSPMAP00000001422	ENSPMAP00000006205	Uncharacterized protein.	SET domain-containing protein.	0.436
S4R891_PETMA	S4RM85_PETMA	ENSPMAP00000001422	ENSPMAP00000006321	Uncharacterized protein.	ARID domain-containing protein.	0.438
S4R891_PETMA	S4RME2_PETMA	ENSPMAP00000001422	ENSPMAP00000006378	Uncharacterized protein.	Uncharacterized protein.	0.483
S4R891_PETMA	S4RN39_PETMA	ENSPMAP00000001422	ENSPMAP00000006625	Uncharacterized protein.	AT rich interactive domain 4A (RBP1-like).	0.438
S4R891_PETMA	S4RQ83_PETMA	ENSPMAP00000001422	ENSPMAP00000007369	Uncharacterized protein.	Tonsoku-like, DNA repair protein.	0.420
S4R891_PETMA	S4RS81_PETMA	ENSPMAP00000001422	ENSPMAP00000008070	Uncharacterized protein.	NDK domain-containing protein; Belongs to the NDK family.	0.583
S4R891_PETMA	S4RUR2_PETMA	ENSPMAP00000001422	ENSPMAP00000008952	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.426
S4RFH9_PETMA	S4R848_PETMA	ENSPMAP00000003961	ENSPMAP00000001379	Speckle type BTB/POZ protein like a.	Uncharacterized protein.	0.494
S4RFH9_PETMA	S4R891_PETMA	ENSPMAP00000003961	ENSPMAP00000001422	Speckle type BTB/POZ protein like a.	Uncharacterized protein.	0.483