Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
S4R896_PETMATHUMP domain containing 3. (477 aa)    
Predicted Functional Partners:
S4RJ54_PETMA
tRNA methyltransferase subunit 11-2.
    
 
 0.957
S4RR09_PETMA
Uncharacterized protein.
   
 0.849
S4RGT5_PETMA
Uncharacterized protein.
    
   0.833
S4RXH8_PETMA
Uncharacterized protein.
    
   0.833
S4RA81_PETMA
NCK interacting protein with SH3 domain.
    
 
 0.722
S4RF48_PETMA
Growth arrest-specific 7a.
    
 0.681
S4RJ94_PETMA
Uncharacterized protein.
      
 0.668
S4RTT3_PETMA
tRNA methyltransferase 11 homolog.
     
 0.638
S4RAS4_PETMA
Uncharacterized protein.
    
 
 0.615
S4RMI2_PETMA
Terminal uridylyl transferase 1, U6 snRNA-specific.
      
 0.605
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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