Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R8A0_PETMAPX domain-containing protein. (357 aa)    
Predicted Functional Partners:
S4RWF4_PETMA
Uncharacterized protein.
     
 0.783
S4REL7_PETMA
Sorting nexin 1a.
   
 0.771
S4RAF3_PETMA
Uncharacterized protein.
    
 0.760
S4RC71_PETMA
Dynamin 1-like; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.760
S4RP09_PETMA
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.760
S4RRP4_PETMA
Dynamin 1-like.
    
 0.760
S4RFG4_PETMA
AP complex subunit beta.
    
 0.747
S4RQE4_PETMA
F-BAR domain-containing protein.
    
 0.743
S4R4N9_PETMA
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.739
S4RSC6_PETMA
IPPc domain-containing protein.
    
 0.736
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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