S4R8A3_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R8A3_PETMA

CRAL_TRIO_N domain-containing protein. (124 aa)

Predicted Functional Partners:

S4R9B1_PETMA

0.565

S4RHU0_PETMA

0.565

S4RW07_PETMA

0.565

S4R6N6_PETMA

0.526

S4RB16_PETMA

0.500

S4RT42_PETMA

0.486

S4RYS6_PETMA

0.484

S4R6F9_PETMA

0.439

S4R4N9_PETMA

0.406

S4R6G9_PETMA

0.405

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R4N9_PETMA	S4R6G9_PETMA	ENSPMAP00000000168	ENSPMAP00000000799	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Transforming growth factor beta regulator 4.	0.966
S4R4N9_PETMA	S4R8A3_PETMA	ENSPMAP00000000168	ENSPMAP00000001434	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	CRAL_TRIO_N domain-containing protein.	0.406
S4R6F9_PETMA	S4R8A3_PETMA	ENSPMAP00000000789	ENSPMAP00000001434	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	CRAL_TRIO_N domain-containing protein.	0.439
S4R6G9_PETMA	S4R4N9_PETMA	ENSPMAP00000000799	ENSPMAP00000000168	Transforming growth factor beta regulator 4.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.966
S4R6G9_PETMA	S4R8A3_PETMA	ENSPMAP00000000799	ENSPMAP00000001434	Transforming growth factor beta regulator 4.	CRAL_TRIO_N domain-containing protein.	0.405
S4R6N6_PETMA	S4R8A3_PETMA	ENSPMAP00000000866	ENSPMAP00000001434	Uncharacterized protein.	CRAL_TRIO_N domain-containing protein.	0.526
S4R6N6_PETMA	S4RB16_PETMA	ENSPMAP00000000866	ENSPMAP00000002397	Uncharacterized protein.	Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.911
S4R6N6_PETMA	S4RYS6_PETMA	ENSPMAP00000000866	ENSPMAP00000010367	Uncharacterized protein.	Vacuolar protein sorting 72 homolog a.	0.589
S4R8A3_PETMA	S4R4N9_PETMA	ENSPMAP00000001434	ENSPMAP00000000168	CRAL_TRIO_N domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.406
S4R8A3_PETMA	S4R6F9_PETMA	ENSPMAP00000001434	ENSPMAP00000000789	CRAL_TRIO_N domain-containing protein.	Glutathione peroxidase; Belongs to the glutathione peroxidase family.	0.439
S4R8A3_PETMA	S4R6G9_PETMA	ENSPMAP00000001434	ENSPMAP00000000799	CRAL_TRIO_N domain-containing protein.	Transforming growth factor beta regulator 4.	0.405
S4R8A3_PETMA	S4R6N6_PETMA	ENSPMAP00000001434	ENSPMAP00000000866	CRAL_TRIO_N domain-containing protein.	Uncharacterized protein.	0.526
S4R8A3_PETMA	S4R9B1_PETMA	ENSPMAP00000001434	ENSPMAP00000001792	CRAL_TRIO_N domain-containing protein.	Si:dkey-221h15.4; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.565
S4R8A3_PETMA	S4RB16_PETMA	ENSPMAP00000001434	ENSPMAP00000002397	CRAL_TRIO_N domain-containing protein.	Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.500
S4R8A3_PETMA	S4RHU0_PETMA	ENSPMAP00000001434	ENSPMAP00000004772	CRAL_TRIO_N domain-containing protein.	Uncharacterized protein.	0.565
S4R8A3_PETMA	S4RT42_PETMA	ENSPMAP00000001434	ENSPMAP00000008382	CRAL_TRIO_N domain-containing protein.	Cytochrome P450, family 51; Belongs to the cytochrome P450 family.	0.486
S4R8A3_PETMA	S4RW07_PETMA	ENSPMAP00000001434	ENSPMAP00000009397	CRAL_TRIO_N domain-containing protein.	Uncharacterized protein.	0.565
S4R8A3_PETMA	S4RYS6_PETMA	ENSPMAP00000001434	ENSPMAP00000010367	CRAL_TRIO_N domain-containing protein.	Vacuolar protein sorting 72 homolog a.	0.484
S4R9B1_PETMA	S4R8A3_PETMA	ENSPMAP00000001792	ENSPMAP00000001434	Si:dkey-221h15.4; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	CRAL_TRIO_N domain-containing protein.	0.565
S4R9B1_PETMA	S4RHU0_PETMA	ENSPMAP00000001792	ENSPMAP00000004772	Si:dkey-221h15.4; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Uncharacterized protein.	0.900